3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CU*AAG
Length
5 nucleotides
Bulged bases
9GFT|1|AV|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_243 not in the Motif Atlas
Geometric match to IL_8VTW_018
Geometric discrepancy: 0.2129
The information below is about IL_8VTW_018
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

9GFT|1|AV|C|2795
9GFT|1|AV|U|2796
*
9GFT|1|AV|A|2799
9GFT|1|AV|A|2800
9GFT|1|AV|G|2801

Current chains

Chain AV
23S RNA

Nearby chains

No other chains within 10Å

Coloring options:


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