IL_9GFT_246
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9GFT|1|AV|A|2872, 9GFT|1|AV|A|2873
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_246 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.1201
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9GFT|1|AV|G|2843
9GFT|1|AV|G|2844
9GFT|1|AV|U|2845
9GFT|1|AV|G|2846
*
9GFT|1|AV|C|2870
9GFT|1|AV|U|2871
9GFT|1|AV|A|2872
9GFT|1|AV|A|2873
9GFT|1|AV|C|2874
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain AY
- 50S ribosomal protein L3
- Chain Ai
- Large ribosomal subunit protein bL17
- Chain Ak
- Large ribosomal subunit protein bL19
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