3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
9GFT|1|N|A|504, 9GFT|1|N|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_263 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0987
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

9GFT|1|N|G|481
9GFT|1|N|A|482
9GFT|1|N|A|483
9GFT|1|N|C|484
*
9GFT|1|N|G|496
9GFT|1|N|A|497
9GFT|1|N|G|498
9GFT|1|N|U|499
9GFT|1|N|G|500
9GFT|1|N|A|501
9GFT|1|N|A|502
9GFT|1|N|A|503
9GFT|1|N|A|504
9GFT|1|N|A|505
9GFT|1|N|G|506
9GFT|1|N|A|507
9GFT|1|N|A|508
9GFT|1|N|C|509

Current chains

Chain N
23S RNA

Nearby chains

Chain f
Large ribosomal subunit protein uL22
Chain h
Large ribosomal subunit protein uL24

Coloring options:


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