IL_9GFT_267

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_267 not in the Motif Atlas

Homologous match to IL_5J7L_259

Geometric discrepancy: 0.0995

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9GFT|1|N|C|672
9GFT|1|N|C|673
9GFT|1|N|G|674
*
9GFT|1|N|C|806
9GFT|1|N|U|807
9GFT|1|N|G|808

Current chains

Chain N

23S RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain Y

Large ribosomal subunit protein uL15