IL_9GFT_271

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_271 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.1412

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9GFT|1|N|U|703
9GFT|1|N|G|704
9GFT|1|N|A|705
9GFT|1|N|A|706
9GFT|1|N|G|707
*
9GFT|1|N|U|724
9GFT|1|N|G|725
9GFT|1|N|G|726
9GFT|1|N|A|727
9GFT|1|N|G|728

Current chains

Chain N

23S RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL2