3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
9GFT|1|N|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_275 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.2821
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

9GFT|1|N|A|844
9GFT|1|N|A|845
9GFT|1|N|U|846
9GFT|1|N|U|847
9GFT|1|N|C|848
*
9GFT|1|N|G|930
9GFT|1|N|U|931
9GFT|1|N|U|932
9GFT|1|N|A|933
9GFT|1|N|U|934

Current chains

Chain N
23S RNA

Nearby chains

Chain m
Large ribosomal subunit protein uL30

Coloring options:


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