IL_9GFT_282

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_282 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2157

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9GFT|1|N|G|875
9GFT|1|N|C|876
9GFT|1|N|A|877
9GFT|1|N|A|878
9GFT|1|N|G|879
*
9GFT|1|N|C|898
9GFT|1|N|A|899
9GFT|1|N|A|900
9GFT|1|N|C|901
9GFT|1|N|C|902

Current chains

Chain N

23S RNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16