IL_9GFT_286

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_286 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.0958

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9GFT|1|N|U|1004
9GFT|1|N|C|1005
9GFT|1|N|C|1006
9GFT|1|N|C|1007
9GFT|1|N|A|1008
9GFT|1|N|A|1009
9GFT|1|N|A|1010
9GFT|1|N|G|1011
*
9GFT|1|N|C|1150
9GFT|1|N|A|1151

Current chains

Chain N

23S RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL13

Chain d

Large ribosomal subunit protein bL20