IL_9GFT_317

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9GFT|1|N|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_317 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9GFT|1|N|C|1686
9GFT|1|N|G|1687
9GFT|1|N|U|1688
9GFT|1|N|A|1689
9GFT|1|N|A|1690
9GFT|1|N|C|1691
*
9GFT|1|N|G|1696
9GFT|1|N|G|1697
9GFT|1|N|A|1698
9GFT|1|N|G|1699
9GFT|1|N|A|1700
9GFT|1|N|A|1701
9GFT|1|N|G|1702

Current chains

Chain N

23S RNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain P

Large ribosomal subunit protein uL2