IL_9GFT_318

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9GFT|1|N|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_318 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1618

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GFT|1|N|U|1712
9GFT|1|N|A|1713
9GFT|1|N|U|1714
9GFT|1|N|G|1715
9GFT|1|N|U|1716
9GFT|1|N|A|1717
9GFT|1|N|G|1718
*
9GFT|1|N|U|1742
9GFT|1|N|G|1743
9GFT|1|N|A|1744
9GFT|1|N|A|1745
9GFT|1|N|A|1746

Current chains

Chain N

23S RNA

Nearby chains