IL_9GFT_324
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*UAAA
- Length
- 6 nucleotides
- Bulged bases
- 9GFT|1|N|A|1899, 9GFT|1|N|A|1900
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_324 not in the Motif Atlas
- Homologous match to IL_5J7L_315
- Geometric discrepancy: 0.0879
- The information below is about IL_5J7L_315
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
9GFT|1|N|U|1841
9GFT|1|N|G|1842
*
9GFT|1|N|U|1898
9GFT|1|N|A|1899
9GFT|1|N|A|1900
9GFT|1|N|A|1901
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain P
- Large ribosomal subunit protein uL2
Coloring options: