IL_9GGR_054

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9GGR|1|0|A|1257, 9GGR|1|0|A|1280, 9GGR|1|0|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_054 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1745

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9GGR|1|0|G|1255
9GGR|1|0|A|1256
9GGR|1|0|A|1257
9GGR|1|0|G|1258
*
9GGR|1|0|C|1277
9GGR|1|0|G|1278
9GGR|1|0|G|1279
9GGR|1|0|A|1280
9GGR|1|0|C|1281
9GGR|1|0|C|1282

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein uS3

Chain 9

Small ribosomal subunit protein uS10

Chain G

Small ribosomal subunit protein uS14