IL_9GGR_077

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_077 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9GGR|1|AA|G|128
9GGR|1|AA|A|129
9GGR|1|AA|A|130
9GGR|1|AA|A|131
*
9GGR|1|AA|U|231
9GGR|1|AA|G|232
9GGR|1|AA|C|233

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AP

Small ribosomal subunit protein uS17

Chain AS

Small ribosomal subunit protein bS20