IL_9GGR_082
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9GGR|1|AA|U|244, 9GGR|1|AA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_082 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1119
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GGR|1|AA|G|242
9GGR|1|AA|A|243
9GGR|1|AA|U|244
9GGR|1|AA|U|245
9GGR|1|AA|A|246
9GGR|1|AA|G|247
*
9GGR|1|AA|C|277
9GGR|1|AA|G|278
9GGR|1|AA|A|279
9GGR|1|AA|C|280
9GGR|1|AA|G|281
9GGR|1|AA|A|282
9GGR|1|AA|U|283
9GGR|1|AA|C|284
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AP
- Small ribosomal subunit protein uS17
- Chain z
- Small ribosomal subunit protein uS12
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