IL_9GGR_120

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

9GGR|1|AA|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_120 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2048

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9GGR|1|AA|C|1158
9GGR|1|AA|U|1159
9GGR|1|AA|G|1160
9GGR|1|AA|C|1161
*
9GGR|1|AA|G|1175
9GGR|1|AA|A|1176
9GGR|1|AA|G|1177
9GGR|1|AA|G|1178
9GGR|1|AA|A|1179
9GGR|1|AA|A|1180
9GGR|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS2

Chain AI

Small ribosomal subunit protein uS9

Chain B

ATP-dependent RNA helicase HrpA