IL_9GGR_121

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

9GGR|1|AA|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_121 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.1398

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

9GGR|1|AA|U|1247
9GGR|1|AA|A|1248
9GGR|1|AA|C|1249
9GGR|1|AA|A|1250
9GGR|1|AA|A|1251
9GGR|1|AA|A|1252
9GGR|1|AA|G|1253
*
9GGR|1|AA|C|1284
9GGR|1|AA|A|1285
9GGR|1|AA|U|1286
9GGR|1|AA|A|1287
9GGR|1|AA|A|1288
9GGR|1|AA|A|1289
9GGR|1|AA|G|1290

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS7

Chain AI

Small ribosomal subunit protein uS9

Chain AJ

Small ribosomal subunit protein uS10