IL_9GGR_155

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9GGR|1|AV|G|776, 9GGR|1|AV|A|788, 9GGR|1|AV|A|789, 9GGR|1|AV|U|790

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_155 not in the Motif Atlas

Geometric match to IL_8C3A_036

Geometric discrepancy: 0.1026

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9GGR|1|AV|G|775
9GGR|1|AV|G|776
9GGR|1|AV|G|777
*
9GGR|1|AV|C|787
9GGR|1|AV|A|788
9GGR|1|AV|A|789
9GGR|1|AV|U|790
9GGR|1|AV|C|791

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AX

Large ribosomal subunit protein uL2

Chain AZ

Large ribosomal subunit protein uL4

Chain An

Large ribosomal subunit protein uL22

Chain Ax

Large ribosomal subunit protein bL34