IL_9GGR_173

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_173 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.2268

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9GGR|1|AV|G|1038
9GGR|1|AV|A|1039
9GGR|1|AV|A|1040
9GGR|1|AV|G|1041
*
9GGR|1|AV|C|1114
9GGR|1|AV|G|1115
9GGR|1|AV|G|1116
9GGR|1|AV|C|1117

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ah

50S ribosomal protein L16

Chain Aq

Large ribosomal subunit protein bL25