IL_9GGR_177
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 9GGR|1|AV|G|1248
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_177 not in the Motif Atlas
- Homologous match to IL_5J7L_286
- Geometric discrepancy: 0.1306
- The information below is about IL_5J7L_286
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
9GGR|1|AV|C|1196
9GGR|1|AV|G|1197
9GGR|1|AV|U|1198
*
9GGR|1|AV|A|1247
9GGR|1|AV|G|1248
9GGR|1|AV|U|1249
9GGR|1|AV|G|1250
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain AZ
- Large ribosomal subunit protein uL4
- Chain Ag
- Large ribosomal subunit protein uL15
- Chain Al
- Large ribosomal subunit protein bL20
Coloring options: