IL_9GGR_200

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9GGR|1|AV|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_200 not in the Motif Atlas

Homologous match to IL_9DFE_068

Geometric discrepancy: 0.1083

The information below is about IL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9GGR|1|AV|C|1686
9GGR|1|AV|G|1687
9GGR|1|AV|U|1688
9GGR|1|AV|A|1689
9GGR|1|AV|A|1690
9GGR|1|AV|C|1691
*
9GGR|1|AV|G|1696
9GGR|1|AV|G|1697
9GGR|1|AV|A|1698
9GGR|1|AV|G|1699
9GGR|1|AV|A|1700
9GGR|1|AV|A|1701
9GGR|1|AV|G|1702

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Large ribosomal subunit protein uL2