IL_9GGR_233

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9GGR|1|AV|G|2576, 9GGR|1|AV|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_233 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1236

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9GGR|1|AV|C|2510
9GGR|1|AV|U|2511
9GGR|1|AV|C|2512
*
9GGR|1|AV|G|2574
9GGR|1|AV|C|2575
9GGR|1|AV|G|2576
9GGR|1|AV|A|2577
9GGR|1|AV|G|2578

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Av

Large ribosomal subunit protein bL32