IL_9GGR_235

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9GGR|1|AV|A|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_235 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1653

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

9GGR|1|AV|U|2522
9GGR|1|AV|G|2523
*
9GGR|1|AV|C|2540
9GGR|1|AV|A|2541
9GGR|1|AV|A|2542
9GGR|1|AV|G|2543

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A