IL_9GGR_242

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9GGR|1|AV|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_242 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1444

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9GGR|1|AV|G|2737
9GGR|1|AV|A|2738
9GGR|1|AV|U|2739
9GGR|1|AV|A|2740
9GGR|1|AV|A|2741
9GGR|1|AV|G|2742
*
9GGR|1|AV|C|2762
9GGR|1|AV|G|2763
9GGR|1|AV|A|2764
9GGR|1|AV|A|2765
9GGR|1|AV|A|2766
9GGR|1|AV|C|2767

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A