IL_9GGR_253
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GGR_253 not in the Motif Atlas
- Homologous match to IL_9DFE_001
- Geometric discrepancy: 0.15
- The information below is about IL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9GGR|1|N|G|24
9GGR|1|N|U|25
9GGR|1|N|G|26
9GGR|1|N|G|27
9GGR|1|N|A|28
9GGR|1|N|U|29
9GGR|1|N|G|30
*
9GGR|1|N|C|510
9GGR|1|N|U|511
9GGR|1|N|G|512
9GGR|1|N|A|513
9GGR|1|N|A|514
9GGR|1|N|A|515
9GGR|1|N|C|516
Current chains
- Chain N
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein bL20
- Chain f
- Large ribosomal subunit protein uL22
- Chain n
- Large ribosomal subunit protein bL32
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