IL_9GGR_268

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9GGR|1|N|G|801, 9GGR|1|N|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_268 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1201

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9GGR|1|N|G|674
9GGR|1|N|A|675
9GGR|1|N|A|676
9GGR|1|N|A|677
9GGR|1|N|C|678
*
9GGR|1|N|G|799
9GGR|1|N|A|800
9GGR|1|N|G|801
9GGR|1|N|A|802
9GGR|1|N|U|803
9GGR|1|N|A|804
9GGR|1|N|G|805
9GGR|1|N|C|806

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein uL4

Chain Y

Large ribosomal subunit protein uL15