IL_9GGR_285

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9GGR|1|N|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_285 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.1607

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9GGR|1|N|C|998
9GGR|1|N|U|999
9GGR|1|N|A|1000
9GGR|1|N|A|1001
9GGR|1|N|G|1002
*
9GGR|1|N|C|1153
9GGR|1|N|G|1154
9GGR|1|N|A|1155
9GGR|1|N|A|1156
9GGR|1|N|G|1157

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain O

5S ribosomal RNA; 5S rRNA

Chain d

Large ribosomal subunit protein bL20

Chain e

Large ribosomal subunit protein bL21

Chain m

Large ribosomal subunit protein uL30