IL_9GGR_286

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_286 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1088

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9GGR|1|N|U|1004
9GGR|1|N|C|1005
9GGR|1|N|C|1006
9GGR|1|N|C|1007
9GGR|1|N|A|1008
9GGR|1|N|A|1009
9GGR|1|N|A|1010
9GGR|1|N|G|1011
*
9GGR|1|N|C|1150
9GGR|1|N|A|1151

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL13

Chain d

Large ribosomal subunit protein bL20