IL_9GGR_292

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9GGR|1|N|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_292 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1828

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9GGR|1|N|C|1043
9GGR|1|N|C|1044
9GGR|1|N|C|1045
9GGR|1|N|A|1046
9GGR|1|N|G|1047
9GGR|1|N|A|1048
9GGR|1|N|C|1049
9GGR|1|N|A|1050
9GGR|1|N|G|1051
*
9GGR|1|N|U|1108
9GGR|1|N|C|1109
9GGR|1|N|G|1110
9GGR|1|N|A|1111
9GGR|1|N|G|1112

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL6

Chain x

Large ribosomal subunit protein uL10