IL_9GGR_316

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9GGR|1|N|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_316 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1117

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9GGR|1|N|A|1669
9GGR|1|N|C|1670
9GGR|1|N|U|1671
9GGR|1|N|A|1672
9GGR|1|N|G|1673
9GGR|1|N|G|1674
*
9GGR|1|N|C|1990
9GGR|1|N|U|1991
9GGR|1|N|G|1992
9GGR|1|N|U|1993

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

Large ribosomal subunit protein uL14