IL_9GGR_326

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_326 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1135

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GGR|1|N|U|1851
9GGR|1|N|U|1852
9GGR|1|N|A|1853
9GGR|1|N|A|1854
9GGR|1|N|U|1855
9GGR|1|N|U|1856
9GGR|1|N|G|1857
9GGR|1|N|A|1858
9GGR|1|N|U|1859
9GGR|1|N|G|1860
*
9GGR|1|N|U|1882
9GGR|1|N|U|1883
9GGR|1|N|G|1884
9GGR|1|N|A|1885
9GGR|1|N|U|1886
9GGR|1|N|C|1887
9GGR|1|N|G|1888
9GGR|1|N|A|1889
9GGR|1|N|A|1890
9GGR|1|N|G|1891

Current chains

Chain N

23S ribosomal RNA

Nearby chains