IL_9GGR_336

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GGR_336 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.1793

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9GGR|1|N|C|2103
9GGR|1|N|C|2104
9GGR|1|N|U|2105
*
9GGR|1|N|A|2184
9GGR|1|N|U|2185
9GGR|1|N|G|2186

Current chains

Chain N

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL1