IL_9GHA_038

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.065

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9GHA|1|A|G|887
9GHA|1|A|G|888
9GHA|1|A|A|889
9GHA|1|A|G|890
9GHA|1|A|U|891
9GHA|1|A|A|892
9GHA|1|A|C|893
9GHA|1|A|G|894
*
9GHA|1|A|U|905
9GHA|1|A|A|906
9GHA|1|A|A|907
9GHA|1|A|A|908
9GHA|1|A|A|909
9GHA|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12