IL_9GHA_059

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9GHA|1|A|A|1492, 9GHA|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_059 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.182

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9GHA|1|A|5MC|1407
9GHA|1|A|A|1408
9GHA|1|A|C|1409
*
9GHA|1|A|G|1491
9GHA|1|A|A|1492
9GHA|1|A|A|1493
9GHA|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

Elongation factor G

Chain a

Large subunit ribosomal RNA; LSU rRNA