IL_9GHA_071

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_071 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0502

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9GHA|1|a|C|239
9GHA|1|a|C|240
9GHA|1|a|A|241
9GHA|1|a|G|242
9GHA|1|a|U|243
9GHA|1|a|A|244
9GHA|1|a|G|245
*
9GHA|1|a|C|253
9GHA|1|a|G|254
9GHA|1|a|A|255
9GHA|1|a|A|256
9GHA|1|a|C|257
9GHA|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15