3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
AAU*AGGUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHA_147 not in the Motif Atlas
Geometric match to IL_5J7L_332
Geometric discrepancy: 0.1389
The information below is about IL_5J7L_332
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61476.2
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
7

Unit IDs

9GHA|1|a|A|2297
9GHA|1|a|A|2298
9GHA|1|a|U|2299
*
9GHA|1|a|A|2317
9GHA|1|a|G|2318
9GHA|1|a|G|2319
9GHA|1|a|U|2320
9GHA|1|a|U|2321

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L5
Chain n
50S ribosomal protein L18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1815 s