IL_9GHB_020

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHB_020 not in the Motif Atlas

Geometric match to IL_5J7L_021

Geometric discrepancy: 0.1054

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9GHB|1|A|C|440
9GHB|1|A|A|441
9GHB|1|A|G|442
*
9GHB|1|A|C|492
9GHB|1|A|A|493
9GHB|1|A|G|494
9GHB|1|A|A|495
9GHB|1|A|A|496
9GHB|1|A|G|497

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4