IL_9GHB_126

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHB_126 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.03

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9GHB|1|a|G|1666
9GHB|1|a|G|1667
9GHB|1|a|A|1668
9GHB|1|a|A|1669
9GHB|1|a|C|1670
9GHB|1|a|U|1671
9GHB|1|a|A|1672
9GHB|1|a|G|1673
9GHB|1|a|G|1674
*
9GHB|1|a|C|1990
9GHB|1|a|U|1991
9GHB|1|a|G|1992
9GHB|1|a|U|1993
9GHB|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14