IL_9GHC_131

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHC_131 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1137

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9GHC|1|a|U|1720
9GHC|1|a|G|1721
9GHC|1|a|A|1722
9GHC|1|a|G|1723
9GHC|1|a|G|1724
*
9GHC|1|a|U|1736
9GHC|1|a|G|1737
9GHC|1|a|G|1738
9GHC|1|a|A|1739
9GHC|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains