IL_9GHC_157

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9GHC|1|a|G|2576, 9GHC|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHC_157 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0622

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9GHC|1|a|C|2510
9GHC|1|a|U|2511
9GHC|1|a|C|2512
*
9GHC|1|a|G|2574
9GHC|1|a|C|2575
9GHC|1|a|G|2576
9GHC|1|a|A|2577
9GHC|1|a|G|2578

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

50S ribosomal protein L32