IL_9GHD_041

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9GHD|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1161

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9GHD|1|A|G|933
9GHD|1|A|C|934
9GHD|1|A|A|935
*
9GHD|1|A|U|1380
9GHD|1|A|U|1381
9GHD|1|A|C|1382
9GHD|1|A|C|1383
9GHD|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain Z

Transfer RNA; tRNA