IL_9GHD_050

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9GHD|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1183

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9GHD|1|A|G|1124
9GHD|1|A|U|1125
9GHD|1|A|U|1126
9GHD|1|A|G|1127
9GHD|1|A|C|1128
*
9GHD|1|A|G|1144
9GHD|1|A|A|1145
9GHD|1|A|A|1146
9GHD|1|A|C|1147
9GHD|1|A|U|1148
9GHD|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10