3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
UC*GUUA
Length
6 nucleotides
Bulged bases
9GHD|1|a|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHD_089 not in the Motif Atlas
Homologous match to IL_5J7L_268
Geometric discrepancy: 0.119
The information below is about IL_5J7L_268
Detailed Annotation
Stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_56987.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
3

Unit IDs

9GHD|1|a|U|847
9GHD|1|a|C|848
*
9GHD|1|a|G|930
9GHD|1|a|U|931
9GHD|1|a|U|932
9GHD|1|a|A|933

Current chains

Chain a
23S rRNA

Nearby chains

Chain y
50S ribosomal protein L30

Coloring options:


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