3D structure

PDB id
9GHD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
9GHD|1|a|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHD_103 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.1344
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9GHD|1|a|C|1043
9GHD|1|a|C|1044
9GHD|1|a|C|1045
9GHD|1|a|A|1046
9GHD|1|a|G|1047
9GHD|1|a|A|1048
9GHD|1|a|C|1049
9GHD|1|a|A|1050
9GHD|1|a|G|1051
*
9GHD|1|a|U|1108
9GHD|1|a|C|1109
9GHD|1|a|G|1110
9GHD|1|a|A|1111
9GHD|1|a|G|1112

Current chains

Chain a
23S rRNA

Nearby chains

Chain g
50S ribosomal protein L6

Coloring options:


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