IL_9GHD_108

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GHD|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0658

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GHD|1|a|C|1208
9GHD|1|a|U|1209
9GHD|1|a|G|1210
9GHD|1|a|C|1211
9GHD|1|a|G|1212
9GHD|1|a|A|1213
9GHD|1|a|A|1214
9GHD|1|a|G|1215
*
9GHD|1|a|U|1234
9GHD|1|a|G|1235
9GHD|1|a|G|1236
9GHD|1|a|A|1237
9GHD|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20