IL_9GHD_119

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9GHD|1|a|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_119 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2365

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHD|1|a|U|1468
9GHD|1|a|A|1469
9GHD|1|a|A|1470
9GHD|1|a|G|1471
*
9GHD|1|a|U|1520
9GHD|1|a|G|1521
9GHD|1|a|A|1522
9GHD|1|a|U|1523
9GHD|1|a|G|1524

Current chains

Chain a

23S rRNA

Nearby chains