IL_9GHD_137

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0581

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHD|1|a|U|1851
9GHD|1|a|U|1852
9GHD|1|a|A|1853
9GHD|1|a|A|1854
9GHD|1|a|U|1855
9GHD|1|a|U|1856
9GHD|1|a|G|1857
9GHD|1|a|A|1858
9GHD|1|a|U|1859
9GHD|1|a|G|1860
*
9GHD|1|a|U|1882
9GHD|1|a|U|1883
9GHD|1|a|G|1884
9GHD|1|a|A|1885
9GHD|1|a|U|1886
9GHD|1|a|C|1887
9GHD|1|a|G|1888
9GHD|1|a|A|1889
9GHD|1|a|A|1890
9GHD|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains