IL_9GHE_128

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_128 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0273

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9GHE|1|a|G|1666
9GHE|1|a|G|1667
9GHE|1|a|A|1668
9GHE|1|a|A|1669
9GHE|1|a|C|1670
9GHE|1|a|U|1671
9GHE|1|a|A|1672
9GHE|1|a|G|1673
9GHE|1|a|G|1674
*
9GHE|1|a|C|1990
9GHE|1|a|U|1991
9GHE|1|a|G|1992
9GHE|1|a|U|1993
9GHE|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14