IL_9GHE_132

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_132 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.0936

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9GHE|1|a|U|1720
9GHE|1|a|G|1721
9GHE|1|a|A|1722
9GHE|1|a|G|1723
9GHE|1|a|G|1724
*
9GHE|1|a|U|1736
9GHE|1|a|G|1737
9GHE|1|a|G|1738
9GHE|1|a|A|1739
9GHE|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains