IL_9GHE_138

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_138 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0504

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GHE|1|a|U|1851
9GHE|1|a|U|1852
9GHE|1|a|A|1853
9GHE|1|a|A|1854
9GHE|1|a|U|1855
9GHE|1|a|U|1856
9GHE|1|a|G|1857
9GHE|1|a|A|1858
9GHE|1|a|U|1859
9GHE|1|a|G|1860
*
9GHE|1|a|U|1882
9GHE|1|a|U|1883
9GHE|1|a|G|1884
9GHE|1|a|A|1885
9GHE|1|a|U|1886
9GHE|1|a|C|1887
9GHE|1|a|G|1888
9GHE|1|a|A|1889
9GHE|1|a|A|1890
9GHE|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains