IL_9GHE_163

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_163 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0657

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9GHE|1|a|C|2652
9GHE|1|a|U|2653
9GHE|1|a|A|2654
9GHE|1|a|G|2655
9GHE|1|a|U|2656
9GHE|1|a|A|2657
9GHE|1|a|C|2658
*
9GHE|1|a|G|2663
9GHE|1|a|G|2664
9GHE|1|a|A|2665
9GHE|1|a|C|2666
9GHE|1|a|C|2667
9GHE|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6